Bibliography Courn`ede P.H. 2 f´evrier 2013

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Journaux Internationaux avec Comit´ e de Lecture

[1] A. Mathieu, V. Letort, P.-H. Courn`ede, B. Zhang, P. Heuret, and P. De Reffye. Oscillations in Functional Structural Plant Growth Models. Mathematical Modelling of Natural Phenomena, 7(6) :47–66, December 2012. [2] Q.L. Wu, P.-H. Courn`ede, and A. Mathieu. An efficient computational method for global sensitivity analysis and its application to tree growth modelling. Reliability Engineering & System Safety, 107 :35–43, 2012. [3] L. Wu, F.-X. Le Dimet, P. de Reffye, B.G. Hu, and P.-H. Courn`ede. An optimal control methodology for plant growth - Case study of a water supply problem of sunflower. Mathematics and Computers in Simulation, 82 :909–923, 2012. [4] H. Guo, X. Lei, P.-H. Courn`ede, and V. Letort. Characterization of the effects of inter-tree competition on source-sink balance in chinese pine trees with the greenlab model. Trees - Structure and Function, 26(2) :1057–1067, 2012. [5] J. Bertheloot, P.-H. Courn`ede, and B. Andrieu. NEMA, a functional-structural model of N economy within wheat culms after flowering : I. Model description. Annals of Botany, 108(6) :1085–1096, 2011. [6] J. Bertheloot, Q. Wu, P.-H. Courn`ede, and B. Andrieu. NEMA, a functional-structural model of N economy within wheat culms after flowering : II. Evaluation and sensitivity analysis. Annals of Botany, 107(5) :1097–1109, 2011. [7] P.-H. Courn`ede, V. Letort, A. Mathieu, M.-Z. Kang, S. Lemaire, S. Trevezas, F. Houllier, and P. de Reffye. Some parameter estimation issues in functional-structural plant modelling. Mathematical Modelling of Natural Phenomena, 6(2) :133–159, 2011. [8] X.J. Wang, A. Mathieu, P.-H. Courn`ede, A. Jullien, J.-M. Allirand, P. de Reffye, and B.G. Zhang. Variability and regulation of the number of ovules, seeds and pods according to assimilate availability in winter oilseed rape (brassica napus l.). Field Crops Research, 122 (1) :60–69, 2011. [9] A. Jullien, A. Mathieu, J.-M. Allirand, A. Pinet, P. de Reffye, P.-H. Courn`ede, and B. Ney. Characterisation of the interactions between architecture and source :sink relationships in winter oilseed rape (brassica napus l.) using the greenlab model. Annals of Botany, 107 (5) :765–779, 2011. [10] C. Loi, P.-H. Courn`ede, and J. Fran¸con. A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0l-systems. 21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA’10). DMTCS Proceedings, AM :473–488, 2010.

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[11] Y. Ma, A.M. Wubs, A. Mathieu, E. Heuvelink, J.Y. Zhu, P.-H. Courn`ede, B.G. Hu, and P. de Reffye. Simulation of fruit-set and trophic competition and optimization of yield advantages in six capsicum cultivars using functional-structural plant modelling. Annals of Botany, 107(5) :793–803, 2010. [12] B. Pallas, C. Loi, A. Christophe, P.-H. Courn`ede, and J. Lecoeur. Comparison of three approaches to model grapevine organogenesis in conditions of fluctuating temperature, solar radiation and soil water content. Annals of Botany, 107(5) :729–745, 2011. [13] R. Qi, Y. Ma, B. Hu, P. De Reffye, and P.-H. Courn`ede. Optimization of source-sink dynamics in plant growth for ideotype breeding : a case study on maize. Computers and Electronics in Agriculture, 71(1) :96–105, April 2010. [14] A. Mathieu, P.-H. Courn`ede, V. Letort, D. Barth´el´emy, and P. de Reffye. A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition. Annals of Botany, 103 (8) :1173–1186, 2009. [15] B. Pallas, A. Christophe, P.-H. Courn`ede, and J. Lecoeur. Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine (Vitis vinifera l.). Functional Plant Biology, 36 :156–170, 2009. [16] R. Qi, V. Letort, M.Z. Kang, P.-H. Courn`ede, P. de Reffye, and T. Fourcaud. Application of the greenlab model to simulate and optimize wood production and tree stability : a theoretical study. Silva Fennica, 43 :465–487, 2009. [17] A. Christophe, V. Letort, I. Hummel, P.-H. Courn`ede, P. de Reffye, and J. Lecoeur. A model-based analysis of the dynamics of carbon balance at the whole plant level in Arabidopsis Thaliana. Functional Plant Biology, 35(11) :1147–1162, 2008. [18] P.-H. Courn`ede, A. Mathieu, F. Houllier, D. Barth´el´emy, and P. de Reffye. Computing competition for light in the Greenlab model of plant growth : a contribution to the study of the effects of density on resource acquisition and architectural development. Annals of Botany, 101(8) :1207–1219, 2008. [19] M.Z. Kang, P.-H. Courn`ede, P. de Reffye, D. Auclair, and B.G. Hu. Analytical study of a stochastic plant growth model : application to the greenlab model. Mathematics and Computers in Simulation, 78(1) :57–75, 2008. [20] V. Letort, P. Mahe, P.-H. Courn`ede, P. de Reffye, and B. Courtois. Quantitative genetics and functional-structural plant growth models : Simulation of quantitative trait loci detection for model parameters and application to potential yield optimization. Annals of Botany, 101(8), 2008. [21] V. Letort, P.-H. Courn`ede, A. Mathieu, P. de Reffye, and T. Constant. Parametric identification of a functional-structural tree growth model and application to beech trees (Fagus sylvatica). Functional Plant Biology, 35(10) :951–963, 2008. [22] C. Loi and P.-H. Courn`ede. Generating functions of stochastic L-systems and application to models of plant development. Discrete Mathematics and Theoretical Computer Science Proceedings, AI :325–338, 2008. [23] Y. Ma, M.P. Wen, Y. Guo, B.G. Li, P.-H. Courn`ede, and P. de Reffye. Parameter optimization and field validation of the functional-structural model greenlab for maize at different population densities. Annals of Botany, 101(8), 2008. [24] A. Mathieu, P.-H. Courn`ede, D. Barth´el´emy, and P. de Reffye. Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning. Annals of Botany, 101(8), 2008. 2

[25] S.H. Yang, B.G. HU, and P.-H. Courn`ede. Structural identifiability of generalized constraint neural network models for nonlinear regression. Neurocomputing, 72 :392– 400, 2008. [26] V. Le Chevalier, M. Jaeger, X. Mei, and P.-H. Courn`ede. Simulation and visualisation of functional landscapes : effects of the water resource competition between plants. Journal of computer science and technology, 22(6) :835–845, Nov. 2007. [27] P.-H. Courn`ede, M.Z. Kang, A. Mathieu, J.F. Barczi, H.P. Yan, B.G. Hu, and P. de Reffye. Structural Factorization of Plants to Compute their Functional and Architectural Growth. Simulation, 82(7) :427–438, 2006. [28] P.-H. Courn`ede, B. Koobus, and A. Dervieux. Positivity statements for a mixed-elementvolume scheme on mixed and moving grids. European Journal of Computational Mechanics, 15(7) :767–799, 2006. [29] A. Mathieu, P.-H. Courn`ede, and P. de Reffye. A dynamical model of plant growth with full retroaction between organogenesis and photosynthesis. ARIMA, 4 :101–107, 2006. [30] L. Wu, P. de Reffye, B.G. Hu, F.-X. Le Dimet, and P.-H. Courn`ede. A water supply optimization problem for plant growth based on greenlab model. ARIMA, 3 :194–207, 2005.

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Chapitres d’Ouvrages

[31] F. Kang, T. Galinier, P.-H. Courn`ede, and J. Lecoeur. Parameterization of plant growth models to characterize genotype by environment interactions : a methodology adapted to breeding programs. In N. Halford and M. Semenov, editors, Aspects of Applied Biology 107 : Systems Approaches to Crop Improvement, pages 27–35. 2011. [32] S. Lemaire, F. Maupas, P.-H. Courn`ede, and P. de Reffye. A morphogenetic crop model for sugar-beet (beta vulgaris l.). In W. Cao, J. White, and E. Wang, editors, Crop Modeling and Decision Support, pages 116–129. Springer, 2009. [33] M.Z. Kang, P.-H. Courn`ede, A. Mathieu, V. Letort, and Z.G. QI, R. anf Zhan. A functional-structural plant model : Theories and its applications in agronomy. In W. Cao, J. White, and E. Wang, editors, Crop Modeling and Decision Support, pages 148–160. Springer, 2009. [34] R. Qi, Y.T. Ma, B.G. Hu, P. de Reffye, and P.-H. Courn`ede. New approach for the study of source-sink dynamics on maize. In W. Cao, J. White, and E. Wang, editors, Crop Modeling and Decision Support, pages 161–169. Springer, 2009. [35] P. de Reffye, E. Heuvelink, D. Barth´el´emy, and P.-H. Courn`ede. Plant growth models. In Ecological Models. Vol. 4 of Encyclopedia of Ecology (5 volumes), pages 2824–2837. Jorgensen, S.E. and Fath, B., elsevier (oxford) edition, 2008. [36] P. de Reffye, D. Barth´el´emy, P.-H. Courn`ede, and M. Jaeger. Mod´elisation et simulation de l’architecture et de la production v´eg´etales. In F. Hall´e, editor, Aux origines des plantes. Fayard, 2008. [37] C. Saguez, P.-H. Courn`ede, B. Desjardins, and A. Llor. Simulation num´erique d’´ecoulements bifluides. In J-L. Menaldi, E. Rofman, and A. Sulem, editors, Optimal Control and Partial Differential Equations - Innovations and Applications. IOS Press, 2000.

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Conf´ erences Internationales avec Comit´ e de Lecture et Actes

[38] K. Smolenova, W. Kurth, and P.-H. Courn`ede. Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet. In R. Echahed, A. Habel, and M. Mosbah, editors, Proceedings of the 4th International Workshop on Graph Computation Models (GCM12), pages 114–128, Bremen, Germany, Sept. 2012. [39] C. Baey, S. Li, P.-H. Courn`ede, S. Lemaire, and F. Maupas. Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet. In M.Z. Kang, Y. Dumont, and Y. Guo, editors, Proceedings of the 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, pages 30–37, Shanghai, Chine, Oct 2012. IEEE. [40] Y. Chen and P.-H. Courn`ede. Assessment of Parameter Uncertainty in Plant Growth Model Identification. In M.Z. Kang, Y. Dumont, and Y. Guo, editors, Proceedings for 2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, pages 43–51, Shanghai, China, Oct 2012. [41] F. Kang, V. Letort, H. Magaldi, P.-H. Courn`ede, and J. Lecoeur. SUNLAB : a FunctionalStructral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop. In M.Z. Kang, Y. Dumont, and Y. Guo, editors, Proceedings of the IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications., pages 148–151, Shanghai, China, Oct 2012. IEEE Press. [42] Y. Chen, B. Bayol, C. Loi, S. Trevezas, and P.-H. Courn`ede. Filtrage par noyaux de convolution it´eratif. In Actes des 44`emes Journ´ees de Statistique JDS2012, Bruxelles 21-25 Mai 2012, 2012. [43] F. Kang, P.-H. Courn`ede, and J. Lecoeur. Irrigation demand simulation of large-scale scenarios and crop genotype selection in water shortage context. In Proceedings of the 3rd International Conference on Environmental Science and Information Application Technology (ESIAT 2011), 2011. [44] Z.P. Li, P.-H. Courn`ede, and Mailhol J.-C. Irrigation optimization by modeling of plantsoil interaction. In C. Angeli, editor, Applied Simulation and Modelling - 2011, Crete, Greece. ACTA Press, June 22-24 2011. [45] C. Baey and P.-H. Courn`ede. Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations. In Proceedings of the 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), 2011. [46] C. Loi, P.-H. Courn`ede, and S. Trevezas. Bayesian Estimation in Functionnal-Structural Plant Models with Stochastic Organogenesis. In Proceedings of the 14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), 2011. [47] Q.L. Wu and P-H. Courn`ede. A methodology to study complex biophysical systems with global sensitivity analysis. In C. B´erenguer, A. Grall, and C. Guedes Soares, editors, Advances in Safety, Reliability and Risk Management. CRC Press, Sep.18-22 2011. ESREL2011, Troyes, France. [48] Q.L. WU and P.-H. Courn`ede. The use of sensitivity analysis for the design of functional structural plant models. Procedia - Social and Behavioral Sciences, 2(6) :7768 – 7769, 2010. Sixth International Conference on Sensitivity Analysis of Model Output. [49] Q. Wu, J. Bertheloot, A. Mathieu, B. Andrieu, and P.-H. Courn`ede. Assessment of non-linearity in functional-structural plant models. In 6th International Workshop on Functional-Structural Plant Models, United States California, Davis, July 2010.

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[50] R. Qi, B.G. Hu, and P.-H. Courn`ede. Psots : A particle swarm optimization toolbox in scilab. In 2009 International Workshop on Open-source Software for Scientific Computation. IEEE Computer Society (Los Alamitos, California), 2010. to appear. [51] J. Bertheloot, P.-H. Courn`ede, and B. Andrieu. Nitrogen acquisition and utilization by crops : review of different approaches and proposition of a mechanistic modeling. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [52] V. Le Chevalier, M. Jaeger, and P.-H. Courn`ede. Synchronisation formalism, resource and plant models for plant ecosystem simulation. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [53] P.-H. Courn`ede, T. Guyard, B. Bayol, S. Griffon, F. de Coligny, P. Borianne, M. Jaeger, and P. de Reffye. A forest growth simulator based on functional-structural modelling of individual trees. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [54] P.-H. Courn`ede and P. de Reffye. Modeling inter-individual variability in sugar beet populations. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [55] S. Lemaire, F. Maupas, P.-H. Courn`ede, J.-M. Allirand, P. de Reffye, and B. Ney. Analysis of the density effects on the source-sink dynamics in sugar-beet growth. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [56] V. Letort, P.-H. Courn`ede, and P. de Reffye. Impact of topology on plant functioning : a theoretical analysis based on the greenlab model equations. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [57] Z.P. Li, V. Le Chevalier, and P.-H. Courn`ede. Towards a continuous approach of functional-structural plant growth. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [58] C. Loi, P.-H. Courn`ede, and J. Fran¸con. Plants as combinatorial structures and applications. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [59] Y.T. Ma, A. Mathieu, A. Wubs, E. Heuvelink, J.Y. Zhu, B.G. Hu, P.-H. Courn`ede, and P. de Reffye. Parameter estimation and growth variation analysis in six capsicum cultivars with functional-structural model greenlab. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. [60] A. Mathieu, V. Letort, R. Gosset, J. Gignoux, and P.-H. Courn`ede. Simulation of morphological plasticity of acacia tortilis in response to herbivore attacks. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applica5

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tions(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. R. Qi, P.-H. Courn`ede, R. Lecoustre, and P. de Reffye. Tri-trophic ecosystem oil palmpests-parasites : I. modeling and simulation modeling and simulation. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. R. Qi, P.-H. Courn`ede, and P. de Reffye. Tri-trophic ecosystem oil palm-pests-parasites : Ii. sensitivity analysis, parameter identification and control. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. X.-J. Wang, A. Mathieu, P.-H. Courn`ede, J.-M. Allirand, A. Jullien, P. de Reffye, and B.G. Zhang. Stochastic models in floral biology and application to the study of oilseed rape fertility. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. Q. Wu and P.-H. Courn`ede. Sensitivity analysis of greenlab model for maize. In B.G. Li, M. Jaeger, and Y. Guo, editors, 3rd international symposium on Plant Growth and Applications(PMA09), Beijing, China. IEEE Computer Society (Los Alamitos, California), November 9-12 2009. to appear. V. Letort, P.-H. Courn`ede, A. Mathieu, P. de Reffye, and T. Constant. Parameter identification of a functional-structural tree growth model and application to beech trees (Fagus sylvatica). In P. Prusinkiewicz, J. Hanan, and B. Lane, editors, Proceedings of the 5th international workshop on Functional-Structural Plant Models (FSPM07). HortResearch (Napier, New Zealand), 2007. P.-H. Courn`ede and P. de Reffye. A generalized poisson model to estimate inter-plant competition for light. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. V. Le Chevalier, M. Jaeger, X. Mei, A. Lesluye, and P.-H. Courn`ede. A functional landscape prototype to simulate water resource competition between plants. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. H. Guo, V. Letort, L. Hong, T. Fourcaud, P.-H. Courn`ede, Y. Lu, and P. de Reffye. Adaptation of the greenlab model for analyzing sink-source relationships in chinese pine saplings. In T. Fourcaud and XP. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications (PMA06). IEEE Computer Society (Los Alamitos, California), 2007. A. Jullien, J.-M. Allirand, P.-H. Courn`ede, A. Mathieu, P. de Reffye, and B. Ney. Is it possible to simulate rapeseed organ mass in relation to n nutrition ? calibration of the functional-structural model greenlab for the oilseed rape brassica napus l. during the vegetative phase for two nitrogen nutrition levels. In Proceedings of the 12th International Rapeseed Congress, Wuhan, China (2007)., 2007. M.Z. Kang, P.-H. Courn`ede, J.-P. Quadrat, and P. de Reffye. A stochastic language for plant topology. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. 6

[71] M.Z. Kang, E. Heuvelink, V. Letort, P.-H. Courn`ede, S. Carvalho, and P. de Reffye. Visualizing reaction of chrysanthemum to temperature and light : model calibration and validation. In P. Prusinkiewicz, J. Hanan, and B. Lane, editors, Proceedings of the 5th international workshop on Functional-Structural Plant Models (FSPM07). HortResearch (Napier, New Zealand), 2007. [72] V. Letort, P. Mahe, P.-H. Courn`ede, P. de Reffye, and B. Courtois. Optimizing plant growth model parameters for genetic selection based on QTL mapping. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. [73] V. Letort, P.-H. Courn`ede, J. Lecoeur, I. Hummel, P. De Reffye, and A. Christophe. Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence : a preliminary model-based study. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. [74] Y.T. Ma, M.P. Wen, B.G. Li, P.-H. Courn`ede, and P. de Reffye. Calibration of greenlab model for maize with sparse experimental data. In T. Fourcaud and X.P. Zhang, editors, The Second International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA06). IEEE (Los Alamitos, California), 2007. [75] A. Mathieu, P.-H. Courn`ede, D. Barth´el´emy, and P. de Reffye. Conditions for the generation of rhythms in a discrete dynamic system. case of a functional structural plant growth model. In T. Fourcaud and X.P. Zhang, editors, PMA06 - Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. [76] A. Mathieu, B.G. Zhang, E. Heuvelink, S.J. Liu, P.-H. Courn`ede, and P. de Reffye. Calibration of fruit cyclic patterns in cucumber plants as a function of source-sink ratio with the greenlab model. In Hanan J Prusinkiewicz P, editor, Proceedings of the 5th international workshop on FSPM, November 2007. [77] R. Qi, B.G. Hu, and P.-H. Courn`ede. Design and implementation of heuristic optimization algorithm platform based on scilab (hops). In SCILAB 2007 Contest and International Workshop, with ”SCILAB Industry Day”, 5 2007. [78] Z.G. Zhan, H. Rey, D. Li, Y. Guo, P.-H. Courn`ede, and P. de Reffye. Study on the effects of defoliation on the growth of cotton plant using the functional structural model greenlab. In T. Fourcaud and X.P. Zhang, editors, Plant growth Modeling, simulation, visualization and their Applications. IEEE Computer Society (Los Alamitos, California), 2007. [79] P. de Reffye and P.-H. Courn`ede. A powerful factorization method to compute plant growth and architecture, applications in agronomy and computer graphics. In D. Hill, V. Barra, and M. Traore, editors, Proceedings of the Open International Conference on Modelling and Simulation (OICMS05), 2005. [80] A. Mathieu, P.-H. Courn`ede, and P. de Reffye. The influence of photosynthesis on the number of metamers per growth unit in greenlab model. In C. Godin and H. Sinoquet, editors, FSMP04, Montpellier, France, June 2004. [81] M.-Z. Kang, P.-H. Courn`ede, J. Le Roux, P. de Reffye, and B.-G. Hu. Theoretical study and numerical simulation of a stochastic model for plant growth. In CARI04, Tunisia, 2004. [82] P.-H. Courn`ede, B. Desjardins, and A. Llor. A tvd lagrange plus remap scheme for the simulation of two-fluid flows. In J Herbin and D. Kr¨oner, editors, The international Symposium on Finite Volume for Complex Applications III. Hermes Penton Science, 2002. 7

[83] P.-H. Courn`ede, B. Desjardins, and A. Llor. A bilagrangian scheme with projection for the simulation of mixing instabilities. In J.-M. Ghidaglia and G. Le Coq, editors, Trends in Numerical and Physical Modeling for Industrial Multiphase Flows, Cargese(France) 27th-29th september 2000, 2000.

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Th` eses et Rapports de Recherche

[84] P.-H. Courn`ede. Dynamic system of plant growth. HDR, University of Montpellier II, 2009. [85] C. Loi and P.-H. Courn`ede. Computing the moments of probability distributions for branching processes. Technical Report 6728, INRIA, 2008. [86] C. Loi and P.-H. Courn`ede. A markovian framework to formalize stochastic l-systems and application to models of plant development. Technical Report 6830, INRIA, 2008. [87] P.-H. Courn`ede. Sch´ema bilagrangien avec projection pour la simulation bifluide des couches limites de m´elange. PhD thesis, (2001). [88] P.-H. Courn`ede, C. Debiez, and A. Dervieux. A positive muscl scheme for triangulations. Technical Report 3465, INRIA, 2001.

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Articles dans des Revues de Vulgarisation

[89] P. de Reffye and P.-H. Courn`ede. Mod´elisation math´ematique de l’architecture des plantes et de la production v´eg´etale. Centraliens, 607, 2010. [90] P. de Reffye, M. Jaeger, and P.-H. Courn`ede. Le monde v´eg´etal. In Maths Nature Express. Comit´e International des Jeux Math´ematiques, 2008. [91] J. Zerubia and P.-H. Courn`ede. Image processing for forest monitoring. ERCIM News, 61, 2005. [92] P.-H. Courn`ede and P. de Reffye. Greenlab : A dynamical model of plant growth for environmental applications. ERCIM News, 61, 2005.

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